| Pubmed_ID | Title | Author | Journal | Year | Comments |
|---|
28811663  | Monitoring Molecular Response in Adult T-cell Leukemia/Lymphoma by High-Throughput Sequencing Clonality Analysis.. | Artesi, M et al. | Leukemia | 2017 | |
| 31217357 | Clones of infected cells arise early in HIV-infected individuals | Coffin, JM et al. | JCI Insight | 2019 | |
| 24735963 | The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia | Cook, LB et al. | Blood | 2014 | |
| 24501411 | Enhancers are major targets for murine leukemia virus vector integration | De Ravin, SS et al. | J Virol | 2014 | |
| 30688658 | Intact HIV-1 proviruses accumulate at distinct chromosomal positions during prolonged antiretroviral therapy | Einkauf, Kevin et al. | JCI | 2019 | sites mapped to hg38 by authors, liftover to hg19 by RID. Patient2, site 21 not found in hg19 |
| 31291371 | Clonal expansion of SIV-infected cells in macaques on antiretroviral therapy is similar to that of HIV-infected cells in humans | Ferris, AL et al. | PLoS Pathog. | 2019 | |
| 29186194 | Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo | Furuta, R et al. | Plos Pathog | 2017 | integration sites were mapped to hg38 by the authors. To make it consistent with RID, the sites have been converted to hg19. 137 sites were not found in hg19 |
| 15163705 | Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes | Han, Y et al. | J Virol | 2004 | |
| 17262715 | Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy | Ikeda, T et al. | J Infect Dis. | 2007 | |
| 24464997 | MLV integration site selection is driven by strong enhancers and active promoters | LaFave, MC et al. | Nucleic Acids Res | 2014 | |
| 12843741 | HIV insertions within and proximal to host cell genes are a common finding in tissues containing high levels of HIV DNA and macrophage-associated p24 antigen expression | Mack, KD et al. | J Acquir Immune Defic Syndr. | 2003 | |
| 24968937 | Specific HIV integration sites are linked to clonal expansion and persistence of infected cells | Maldarelli, Frank et al. | Science | 2014 | |
| 29099869 | Selection for avian leukosis virus integration sites determines the clonal progression of B-cell lymphomas | Malhotra, S et al. | PLoS Pathog. | 2017 | |
| 31361603 | HIV-1 in Lymph Nodes is Maintained by Cellular Proliferation During ART | McManus, W et al. | JCI | 2019 | |
| 30857886 | Identifying integration sites of the HIV-1 genome with intact and aberrant ends through deep sequencing | Ode, H et al. | J Virol Methods | 2019 | Patients P1 to P8 are the same as Maldarelli F. et. al., 2014, Science, 345:179-83 |
| 27095295 | Transcriptional, epigenetic and retroviral signatures identify regulatory regions involved in hematopoietic lineage commitment | Romano, O et al. | Sci Rep | 2016 | |
| 30024859 | HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers | Sharaf, Radwa et al. | JCI | 2018 | |
| 23953889 | HIV latency and integration site placement in five cell-based models | Sherrill-Mix, S et al. | Retrovirology | 2013 | |
| 26545813 | LEDGF/p75 interacts with mRNA splicing factors and targets HIV-1 integration to highly spliced genes | Singh, PK et al. | Genes Dev. | 2015 | |
| SRP065157 | direct submission to Genbank SRP065157 by Parmit Kumar Singh, Andrea Ferris, Stephen H. Hughes and Henry L. Levin | Singh, PK et al. | NA | 2015 | |
| 26912621 | HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay | Sunshine, S et al. | J Virol. | 2016 | |
| 25011556 | HIV latency. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection | Wagner, TA et al. | Science | 2014 | |
