Pubmed_ID | Title | Author | Journal | Year | Comments |
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28811663  | Monitoring Molecular Response in Adult T-cell Leukemia/Lymphoma by High-Throughput Sequencing Clonality Analysis.. | Artesi, M et al. | Leukemia | 2017 |   |
31217357  | Clones of infected cells arise early in HIV-infected individuals | Coffin, JM et al. | JCI Insight | 2019 |   |
24735963  | The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia | Cook, LB et al. | Blood | 2014 |   |
24501411  | Enhancers are major targets for murine leukemia virus vector integration | De Ravin, SS et al. | J Virol | 2014 |   |
30688658  | Intact HIV-1 proviruses accumulate at distinct chromosomal positions during prolonged antiretroviral therapy | Einkauf, Kevin et al. | JCI | 2019 | sites mapped to hg38 by authors, liftover to hg19 by RID. Patient2, site 21 not found in hg19 |
31291371  | Clonal expansion of SIV-infected cells in macaques on antiretroviral therapy is similar to that of HIV-infected cells in humans | Ferris, AL et al. | PLoS Pathog. | 2019 |   |
29186194  | Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo | Furuta, R et al. | Plos Pathog | 2017 | integration sites were mapped to hg38 by the authors. To make it consistent with RID, the sites have been converted to hg19. 137 sites were not found in hg19 |
15163705  | Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes | Han, Y et al. | J Virol | 2004 |   |
17262715  | Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy | Ikeda, T et al. | J Infect Dis. | 2007 |   |
244649977  | MLV integration site selection is driven by strong enhancers and active promoters | LaFave, MC et al. | Nucleic Acids Res | 2014 |   |
12843741  | HIV insertions within and proximal to host cell genes are a common finding in tissues containing high levels of HIV DNA and macrophage-associated p24 antigen expression | Mack, KD et al. | J Acquir Immune Defic Syndr. | 2003 |   |
24968937  | Specific HIV integration sites are linked to clonal expansion and persistence of infected cells | Maldarelli, Frank et al. | Science | 2014 |   |
29099869  | Selection for avian leukosis virus integration sites determines the clonal progression of B-cell lymphomas | Malhotra, S et al. | PLoS Pathog. | 2017 |   |
31361603  | HIV-1 in Lymph Nodes is Maintained by Cellular Proliferation During ART | McManus, W et al. | JCI | 2019 |   |
30857886  | Identifying integration sites of the HIV-1 genome with intact and aberrant ends through deep sequencing | Ode, H et al. | J Virol Methods | 2019 | Patients P1 to P8 are the same as Maldarelli F. et. al., 2014, Science, 345:179-83 |
27095295  | Transcriptional, epigenetic and retroviral signatures identify regulatory regions involved in hematopoietic lineage commitment | Romano, O et al. | Sci Rep | 2016 |   |
30024859  | HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers | Sharaf, Radwa et al. | JCI | 2018 |   |
23953889  | HIV latency and integration site placement in five cell-based models | Sherrill-Mix, S et al. | Retrovirology | 2013 |   |
26545813  | LEDGF/p75 interacts with mRNA splicing factors and targets HIV-1 integration to highly spliced genes | Singh, PK et al. | Genes Dev. | 2015 |   |
SRP065157  | direct submission to Genbank SRP065157 by Parmit Kumar Singh, Andrea Ferris, Stephen H. Hughes and Henry L. Levin | Singh, PK et al. | NA | 2015 |   |
26912621  | HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay | Sunshine, S et al. | J Virol. | 2016 |   |
25011556  | HIV latency. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection | Wagner, TA et al. | Science | 2014 |   |