RID Data Submission

Users are welcome to submit integration site information and patient demographics in the following Excel templates (examples are shown in these templates):

1. Integration site data (download the template here)
patient/sample_idtissue/cell typechromosomepositionprovirus_strandLTRcountcomment
C906PBMCchr16366159+5'1
A907PBMCchr27866678-3'1
B909CD4chr31000506+both1

  • Provirus strand is defined as “+” if the provirus integrated in the same orientation as the chromosome being integrated and “-“ if the provirus integrated in the opposite orientation.
2. Patient demographic if available (download the template here)
patient_idtissue/cellage(year)sexrace/ethnicitytrasmission_modeon_ARTART_duration(year)viremicssample_comment
C906PBMC59FBlackyes8no
A907PBMC6MBlackmother to childyes5no
B909CD459FWhitedrug useyes12no

The integration site data and patient demographics should be sent via email to Wei Shao at rid@mail.nih.gov with the Excel file(s) attached.

© RID. Supported by Advanced Biomedical Computing Center at Leidos/FNLCR.